Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.24□□□□□ -0.13
Rnf40Q3U319 AC102542.1-201ENSMUST00000225204 1138 ntBASIC14.24□□□□□ -0.13
Rnf40Q3U319 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.24□□□□□ -0.13
Rnf40Q3U319 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Gm10728-201ENSMUST00000194292 1829 ntBASIC14.24□□□□□ -0.13
Rnf40Q3U319 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf40Q3U319 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.23□□□□□ -0.13
Rnf40Q3U319 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Gm9103-201ENSMUST00000119371 405 ntBASIC14.23□□□□□ -0.13
Rnf40Q3U319 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Gm28923-201ENSMUST00000187755 322 ntBASIC14.23□□□□□ -0.13
Rnf40Q3U319 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.23□□□□□ -0.13
Rnf40Q3U319 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf40Q3U319 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.22□□□□□ -0.13
Rnf40Q3U319 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm4535-201ENSMUST00000182274 558 ntBASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm44387-201ENSMUST00000196298 145 ntBASIC14.22□□□□□ -0.13
Rnf40Q3U319 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm10355-201ENSMUST00000097146 517 ntBASIC14.22□□□□□ -0.13
Rnf40Q3U319 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm5422-201ENSMUST00000050717 2721 ntBASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.22□□□□□ -0.13
Rnf40Q3U319 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC14.22□□□□□ -0.13
Rnf40Q3U319 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Msantd2-204ENSMUST00000211060 2165 ntTSL 3 BASIC14.22□□□□□ -0.13
Rnf40Q3U319 Gm18263-201ENSMUST00000220846 1928 ntBASIC14.21□□□□□ -0.13
Rnf40Q3U319 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC14.21□□□□□ -0.13
Rnf40Q3U319 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Gm3928-201ENSMUST00000121141 1307 ntBASIC14.21□□□□□ -0.13
Rnf40Q3U319 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.21□□□□□ -0.13
Rnf40Q3U319 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC14.21□□□□□ -0.13
Rnf40Q3U319 Gm7284-201ENSMUST00000131667 944 ntBASIC14.21□□□□□ -0.13
Rnf40Q3U319 4933416E03Rik-201ENSMUST00000133091 1126 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Fam240b-201ENSMUST00000180282 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rnf40Q3U319 Gm43553-201ENSMUST00000200900 685 ntBASIC14.21□□□□□ -0.13
Rnf40Q3U319 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms