Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Rfx1P48377 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rfx1P48377 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Rfx1P48377 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC16.32■□□□□ 0.2
Rfx1P48377 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Rfx1P48377 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.32■□□□□ 0.2
Rfx1P48377 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.32■□□□□ 0.2
Rfx1P48377 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.32■□□□□ 0.2
Rfx1P48377 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Rfx1P48377 Gm18737-201ENSMUST00000173594 937 ntBASIC16.32■□□□□ 0.2
Rfx1P48377 Gm27631-201ENSMUST00000184163 466 ntBASIC16.32■□□□□ 0.2
Rfx1P48377 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.32■□□□□ 0.2
Rfx1P48377 Gm45667-201ENSMUST00000210380 1316 ntBASIC16.32■□□□□ 0.2
Rfx1P48377 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC16.32■□□□□ 0.2
Rfx1P48377 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Rfx1P48377 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC16.31■□□□□ 0.2
Rfx1P48377 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Ssr1-203ENSMUST00000225246 1825 ntBASIC16.31■□□□□ 0.2
Rfx1P48377 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC16.31■□□□□ 0.2
Rfx1P48377 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
Rfx1P48377 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Gm10327-201ENSMUST00000105222 1002 ntBASIC16.31■□□□□ 0.2
Rfx1P48377 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC16.31■□□□□ 0.2
Rfx1P48377 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Rfx1P48377 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC16.31■□□□□ 0.2
Rfx1P48377 Gm5069-202ENSMUST00000192714 1011 ntBASIC16.31■□□□□ 0.2
Rfx1P48377 AA619741-201ENSMUST00000195095 646 ntBASIC16.31■□□□□ 0.2
Rfx1P48377 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC16.31■□□□□ 0.2
Rfx1P48377 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rfx1P48377 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Rfx1P48377 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Gm13015-201ENSMUST00000118674 204 ntBASIC16.3■□□□□ 0.2
Rfx1P48377 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC16.3■□□□□ 0.2
Rfx1P48377 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Mir125a-201ENSMUST00000083545 68 ntBASIC16.3■□□□□ 0.2
Rfx1P48377 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Rfx1P48377 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.3■□□□□ 0.2
Rfx1P48377 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Rfx1P48377 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC16.3■□□□□ 0.2
Rfx1P48377 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Rfx1P48377 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Rfx1P48377 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rfx1P48377 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rfx1P48377 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Rfx1P48377 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rfx1P48377 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rfx1P48377 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms