Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.35□□□□□ -0.11
Usp4P35123 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Usp4P35123 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Usp4P35123 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.35□□□□□ -0.11
Usp4P35123 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC14.35□□□□□ -0.11
Usp4P35123 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Mir6977-201ENSMUST00000184960 64 ntBASIC14.35□□□□□ -0.11
Usp4P35123 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC14.35□□□□□ -0.11
Usp4P35123 Gm5779-201ENSMUST00000218467 910 ntBASIC14.35□□□□□ -0.11
Usp4P35123 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Usp4P35123 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.35□□□□□ -0.11
Usp4P35123 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Usp4P35123 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Gm45706-201ENSMUST00000213063 2136 ntBASIC14.35□□□□□ -0.11
Usp4P35123 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Usp4P35123 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.34□□□□□ -0.11
Usp4P35123 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Gm9824-201ENSMUST00000178707 561 ntBASIC14.34□□□□□ -0.11
Usp4P35123 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 AC139350.3-201ENSMUST00000226151 420 ntBASIC14.34□□□□□ -0.11
Usp4P35123 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Usp4P35123 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.34□□□□□ -0.11
Usp4P35123 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Usp4P35123 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
Usp4P35123 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Usp4P35123 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Usp4P35123 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp4P35123 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Usp4P35123 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.33□□□□□ -0.12
Usp4P35123 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.33□□□□□ -0.12
Usp4P35123 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.33□□□□□ -0.12
Usp4P35123 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Usp4P35123 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Usp4P35123 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 AC166341.4-201ENSMUST00000220625 123 ntBASIC14.33□□□□□ -0.12
Usp4P35123 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp4P35123 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Usp4P35123 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Usp4P35123 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Usp4P35123 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp4P35123 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms