Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Gm2445-201ENSMUST00000182798 989 ntBASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Mir6990-201ENSMUST00000183724 91 ntBASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Gm2756-201ENSMUST00000195851 400 ntBASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.53□□□□□ -0.24
Lima1Q9ERG0 AC131710.1-201ENSMUST00000228336 990 ntBASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Lima1Q9ERG0 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 AC154747.3-201ENSMUST00000224471 3470 ntBASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lima1Q9ERG0 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Gm25287-201ENSMUST00000103846 110 ntBASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Gm22918-201ENSMUST00000103855 110 ntBASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Gm14822-201ENSMUST00000122247 291 ntBASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 AC154725.1-201ENSMUST00000224826 1961 ntBASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
Lima1Q9ERG0 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Gm8116-201ENSMUST00000182917 1201 ntBASIC13.51□□□□□ -0.25
Lima1Q9ERG0 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Gm2213-201ENSMUST00000197485 688 ntBASIC13.51□□□□□ -0.25
Lima1Q9ERG0 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lima1Q9ERG0 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms