Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Gm15429-201ENSMUST00000151268 798 ntBASIC16.13■□□□□ 0.17
Trim56Q80VI1 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC16.13■□□□□ 0.17
Trim56Q80VI1 CT030657.3-201ENSMUST00000222707 1200 ntBASIC16.13■□□□□ 0.17
Trim56Q80VI1 AC150560.1-201ENSMUST00000227731 1187 ntBASIC16.13■□□□□ 0.17
Trim56Q80VI1 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Gm3695-201ENSMUST00000087222 1009 ntBASIC16.13■□□□□ 0.17
Trim56Q80VI1 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Gm44291-201ENSMUST00000203102 2865 ntBASIC16.13■□□□□ 0.17
Trim56Q80VI1 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trim56Q80VI1 AC139350.1-201ENSMUST00000227064 1594 ntBASIC16.13■□□□□ 0.17
Trim56Q80VI1 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim56Q80VI1 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC16.12■□□□□ 0.17
Trim56Q80VI1 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Gm45779-201ENSMUST00000212189 4064 ntBASIC16.12■□□□□ 0.17
Trim56Q80VI1 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim56Q80VI1 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Matn2-206ENSMUST00000228570 2798 ntBASIC16.11■□□□□ 0.17
Trim56Q80VI1 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim56Q80VI1 Gm38197-201ENSMUST00000192320 2122 ntBASIC16.1■□□□□ 0.17
Trim56Q80VI1 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 AL645783.1-201ENSMUST00000221416 1832 ntBASIC16.1■□□□□ 0.17
Trim56Q80VI1 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim56Q80VI1 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms