Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trim28Q62318 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim28Q62318 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Trim28Q62318 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Trim28Q62318 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC17.63■□□□□ 0.41
Trim28Q62318 Gm18054-201ENSMUST00000207539 555 ntBASIC17.63■□□□□ 0.41
Trim28Q62318 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Gm16372-201ENSMUST00000073088 450 ntBASIC17.63■□□□□ 0.41
Trim28Q62318 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim28Q62318 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim28Q62318 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trim28Q62318 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim28Q62318 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim28Q62318 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trim28Q62318 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Gm22018-201ENSMUST00000104357 131 ntBASIC17.62■□□□□ 0.41
Trim28Q62318 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim28Q62318 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim28Q62318 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trim28Q62318 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trim28Q62318 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Gm5620-201ENSMUST00000077991 1348 ntBASIC17.62■□□□□ 0.41
Trim28Q62318 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim28Q62318 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trim28Q62318 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim28Q62318 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC17.61■□□□□ 0.41
Trim28Q62318 Gm5370-201ENSMUST00000187187 574 ntBASIC17.61■□□□□ 0.41
Trim28Q62318 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim28Q62318 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim28Q62318 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Trim28Q62318 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC17.61■□□□□ 0.41
Trim28Q62318 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim28Q62318 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trim28Q62318 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim28Q62318 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms