Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col11a1Q61245 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col11a1Q61245 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC15.01□□□□□ -0.01
Col11a1Q61245 AU022133-201ENSMUST00000200601 873 ntBASIC15.01□□□□□ -0.01
Col11a1Q61245 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col11a1Q61245 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC15.01□□□□□ -0.01
Col11a1Q61245 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col11a1Q61245 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col11a1Q61245 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC15.01□□□□□ -0.01
Col11a1Q61245 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col11a1Q61245 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC15□□□□□ -0.01
Col11a1Q61245 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC15□□□□□ -0.01
Col11a1Q61245 Gm44405-201ENSMUST00000198952 126 ntBASIC15□□□□□ -0.01
Col11a1Q61245 Gm9555-201ENSMUST00000200908 583 ntBASIC15□□□□□ -0.01
Col11a1Q61245 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC15□□□□□ -0.01
Col11a1Q61245 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 AC139350.1-201ENSMUST00000227064 1594 ntBASIC15□□□□□ -0.01
Col11a1Q61245 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Col11a1Q61245 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col11a1Q61245 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Col11a1Q61245 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm6161-201ENSMUST00000121942 1102 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm6254-201ENSMUST00000168178 1072 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm6153-201ENSMUST00000172004 1058 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm5641-202ENSMUST00000198699 1080 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm16481-201ENSMUST00000119074 1227 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm8913-201ENSMUST00000209491 641 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Gm9826-201ENSMUST00000029124 1299 ntBASIC14.99□□□□□ -0.01
Col11a1Q61245 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Col11a1Q61245 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col11a1Q61245 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Col11a1Q61245 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12616-201ENSMUST00000118594 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col11a1Q61245 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12624-201ENSMUST00000177615 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12621-201ENSMUST00000177760 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12615-201ENSMUST00000177970 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12622-201ENSMUST00000177975 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12627-201ENSMUST00000178412 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12625-201ENSMUST00000179122 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12614-201ENSMUST00000179586 382 ntBASIC14.98□□□□□ -0.01
Col11a1Q61245 Gm12613-201ENSMUST00000180323 382 ntBASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms