Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Gm25857-201ENSMUST00000082788 129 ntBASIC15.84■□□□□ 0.13
Traf1P39428 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Gm21038-201ENSMUST00000222205 1383 ntBASIC15.84■□□□□ 0.13
Traf1P39428 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Traf1P39428 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC15.84■□□□□ 0.13
Traf1P39428 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Traf1P39428 Gm37691-201ENSMUST00000192147 2573 ntBASIC15.83■□□□□ 0.13
Traf1P39428 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.13
Traf1P39428 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Traf1P39428 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.83■□□□□ 0.13
Traf1P39428 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Traf1P39428 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Traf1P39428 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC15.83■□□□□ 0.12
Traf1P39428 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.83■□□□□ 0.12
Traf1P39428 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Gm18062-201ENSMUST00000208020 547 ntBASIC15.83■□□□□ 0.12
Traf1P39428 Gm18055-201ENSMUST00000208254 547 ntBASIC15.83■□□□□ 0.12
Traf1P39428 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Traf1P39428 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
Traf1P39428 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Traf1P39428 Gm9816-201ENSMUST00000122292 1414 ntBASIC15.83■□□□□ 0.12
Traf1P39428 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
Traf1P39428 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Traf1P39428 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Traf1P39428 Gm8131-201ENSMUST00000213783 1570 ntBASIC15.83■□□□□ 0.12
Traf1P39428 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Traf1P39428 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
Traf1P39428 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Gm4984-201ENSMUST00000115987 360 ntBASIC15.82■□□□□ 0.12
Traf1P39428 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC15.82■□□□□ 0.12
Traf1P39428 Gm15376-201ENSMUST00000122258 783 ntBASIC15.82■□□□□ 0.12
Traf1P39428 Gm16342-201ENSMUST00000124025 1025 ntBASIC15.82■□□□□ 0.12
Traf1P39428 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC15.82■□□□□ 0.12
Traf1P39428 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC15.82■□□□□ 0.12
Traf1P39428 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC15.82■□□□□ 0.12
Traf1P39428 Gm6266-201ENSMUST00000203844 806 ntBASIC15.82■□□□□ 0.12
Traf1P39428 Gm44799-201ENSMUST00000207639 1202 ntBASIC15.82■□□□□ 0.12
Traf1P39428 Gm6983-201ENSMUST00000214912 628 ntBASIC15.82■□□□□ 0.12
Traf1P39428 AC110817.1-201ENSMUST00000225706 605 ntBASIC15.82■□□□□ 0.12
Traf1P39428 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC15.82■□□□□ 0.12
Traf1P39428 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Matn2-206ENSMUST00000228570 2798 ntBASIC15.82■□□□□ 0.12
Traf1P39428 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Traf1P39428 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.82■□□□□ 0.12
Traf1P39428 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Traf1P39428 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC15.81■□□□□ 0.12
Traf1P39428 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Traf1P39428 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 Gm12928-201ENSMUST00000117115 573 ntBASIC15.81■□□□□ 0.12
Traf1P39428 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC15.81■□□□□ 0.12
Traf1P39428 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC15.81■□□□□ 0.12
Traf1P39428 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Traf1P39428 Gm27486-201ENSMUST00000184923 80 ntBASIC15.81■□□□□ 0.12
Traf1P39428 Gm2495-201ENSMUST00000191160 466 ntBASIC15.81■□□□□ 0.12
Traf1P39428 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.81■□□□□ 0.12
Traf1P39428 Gm44719-201ENSMUST00000206404 149 ntBASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms