Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 AC159308.2-201ENSMUST00000213592 2325 ntBASIC17.71■□□□□ 0.43
Col18a1P39061 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
Col18a1P39061 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Col18a1P39061 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC17.7■□□□□ 0.42
Col18a1P39061 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC17.7■□□□□ 0.42
Col18a1P39061 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Col18a1P39061 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Col18a1P39061 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC17.7■□□□□ 0.42
Col18a1P39061 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC17.7■□□□□ 0.42
Col18a1P39061 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC17.7■□□□□ 0.42
Col18a1P39061 Gm8018-201ENSMUST00000173536 789 ntBASIC17.7■□□□□ 0.42
Col18a1P39061 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col18a1P39061 AC122197.2-201ENSMUST00000219196 1635 ntBASIC17.7■□□□□ 0.42
Col18a1P39061 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.7■□□□□ 0.42
Col18a1P39061 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col18a1P39061 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC17.69■□□□□ 0.42
Col18a1P39061 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC17.69■□□□□ 0.42
Col18a1P39061 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC17.69■□□□□ 0.42
Col18a1P39061 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC17.69■□□□□ 0.42
Col18a1P39061 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC17.69■□□□□ 0.42
Col18a1P39061 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC17.69■□□□□ 0.42
Col18a1P39061 AC099645.1-201ENSMUST00000226476 1105 ntBASIC17.69■□□□□ 0.42
Col18a1P39061 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Col18a1P39061 Gm10312-201ENSMUST00000078515 489 ntBASIC17.69■□□□□ 0.42
Col18a1P39061 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.69■□□□□ 0.42
Col18a1P39061 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.69■□□□□ 0.42
Col18a1P39061 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Col18a1P39061 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col18a1P39061 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC17.69■□□□□ 0.42
Col18a1P39061 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC17.68■□□□□ 0.42
Col18a1P39061 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Gm38210-201ENSMUST00000191944 809 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Gm19187-201ENSMUST00000206781 892 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Gm39404-201ENSMUST00000216350 313 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC17.68■□□□□ 0.42
Col18a1P39061 AC159205.5-202ENSMUST00000224849 386 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 AC167013.1-201ENSMUST00000228592 202 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Col18a1P39061 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Gm2673-201ENSMUST00000120958 1608 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Gm15889-202ENSMUST00000212669 2443 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col18a1P39061 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Gm5778-201ENSMUST00000171003 1072 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Gm9061-201ENSMUST00000182707 1006 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Ighv8-10-201ENSMUST00000199579 358 ntBASIC17.68■□□□□ 0.42
Col18a1P39061 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col18a1P39061 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms