Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Gm27525-201ENSMUST00000184465 107 ntBASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Gm37714-201ENSMUST00000194742 342 ntBASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdh1F7BJK1 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Pcdh1F7BJK1 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Pcdh1F7BJK1 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gm4913-201ENSMUST00000117075 1290 ntBASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gm27631-201ENSMUST00000184163 466 ntBASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdh1F7BJK1 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdh1F7BJK1 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms