Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
Cpsf1Q9EPU4 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Cpsf1Q9EPU4 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Cpsf1Q9EPU4 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Cpsf1Q9EPU4 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Cpsf1Q9EPU4 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Cpsf1Q9EPU4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC30.47■■■□□ 2.47
Cpsf1Q9EPU4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC30.47■■■□□ 2.47
Cpsf1Q9EPU4 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cpsf1Q9EPU4 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
Cpsf1Q9EPU4 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC30.46■■■□□ 2.47
Cpsf1Q9EPU4 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Cpsf1Q9EPU4 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Cpsf1Q9EPU4 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
Cpsf1Q9EPU4 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Cpsf1Q9EPU4 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Cpsf1Q9EPU4 Gm42501-201ENSMUST00000200220 1026 ntBASIC30.45■■■□□ 2.46
Cpsf1Q9EPU4 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cpsf1Q9EPU4 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cpsf1Q9EPU4 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC30.44■■■□□ 2.46
Cpsf1Q9EPU4 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cpsf1Q9EPU4 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cpsf1Q9EPU4 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Cpsf1Q9EPU4 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Cpsf1Q9EPU4 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Cpsf1Q9EPU4 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Cpsf1Q9EPU4 Gm16464-201ENSMUST00000117815 1095 ntBASIC30.42■■■□□ 2.46
Cpsf1Q9EPU4 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
Cpsf1Q9EPU4 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Cpsf1Q9EPU4 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Cpsf1Q9EPU4 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Cpsf1Q9EPU4 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Cpsf1Q9EPU4 Gm9959-201ENSMUST00000068277 390 ntBASIC30.4■■■□□ 2.46
Cpsf1Q9EPU4 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Cpsf1Q9EPU4 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
Cpsf1Q9EPU4 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
Cpsf1Q9EPU4 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Cpsf1Q9EPU4 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Cpsf1Q9EPU4 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC30.39■■■□□ 2.45
Cpsf1Q9EPU4 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC30.39■■■□□ 2.45
Cpsf1Q9EPU4 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Cpsf1Q9EPU4 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC30.38■■■□□ 2.45
Cpsf1Q9EPU4 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
Cpsf1Q9EPU4 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Cpsf1Q9EPU4 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
Cpsf1Q9EPU4 Gm14117-201ENSMUST00000122417 843 ntBASIC30.38■■■□□ 2.45
Cpsf1Q9EPU4 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC30.38■■■□□ 2.45
Cpsf1Q9EPU4 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC30.37■■■□□ 2.45
Cpsf1Q9EPU4 Gm10232-201ENSMUST00000089221 720 ntBASIC30.37■■■□□ 2.45
Cpsf1Q9EPU4 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Cpsf1Q9EPU4 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC30.37■■■□□ 2.45
Cpsf1Q9EPU4 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Cpsf1Q9EPU4 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Cpsf1Q9EPU4 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Cpsf1Q9EPU4 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Cpsf1Q9EPU4 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Cpsf1Q9EPU4 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Cpsf1Q9EPU4 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC30.35■■■□□ 2.45
Cpsf1Q9EPU4 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
Cpsf1Q9EPU4 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Cpsf1Q9EPU4 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Cpsf1Q9EPU4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Cpsf1Q9EPU4 Gm28536-201ENSMUST00000190971 1317 ntBASIC30.33■■■□□ 2.45
Cpsf1Q9EPU4 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Cpsf1Q9EPU4 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Cpsf1Q9EPU4 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC30.32■■■□□ 2.44
Cpsf1Q9EPU4 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Cpsf1Q9EPU4 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Cpsf1Q9EPU4 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Cpsf1Q9EPU4 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Cpsf1Q9EPU4 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Cpsf1Q9EPU4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Cpsf1Q9EPU4 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Cpsf1Q9EPU4 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Cpsf1Q9EPU4 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Cpsf1Q9EPU4 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Cpsf1Q9EPU4 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
Cpsf1Q9EPU4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Cpsf1Q9EPU4 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Cpsf1Q9EPU4 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Cpsf1Q9EPU4 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
Cpsf1Q9EPU4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC30.29■■■□□ 2.44
Cpsf1Q9EPU4 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Cpsf1Q9EPU4 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Cpsf1Q9EPU4 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC30.29■■■□□ 2.44
Cpsf1Q9EPU4 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Cpsf1Q9EPU4 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Cpsf1Q9EPU4 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Cpsf1Q9EPU4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC30.28■■■□□ 2.44
Cpsf1Q9EPU4 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cpsf1Q9EPU4 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Cpsf1Q9EPU4 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms