Protein–RNA interactions for Protein: Q99PJ2

Trim8, Probable E3 ubiquitin-protein ligase TRIM8, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim8Q99PJ2 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim8Q99PJ2 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.06■□□□□ 0.96
Trim8Q99PJ2 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim8Q99PJ2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim8Q99PJ2 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim8Q99PJ2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim8Q99PJ2 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim8Q99PJ2 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Trim8Q99PJ2 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim8Q99PJ2 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim8Q99PJ2 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim8Q99PJ2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.04■□□□□ 0.96
Trim8Q99PJ2 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim8Q99PJ2 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim8Q99PJ2 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim8Q99PJ2 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Trim8Q99PJ2 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim8Q99PJ2 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.03■□□□□ 0.96
Trim8Q99PJ2 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
Trim8Q99PJ2 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim8Q99PJ2 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.03■□□□□ 0.96
Trim8Q99PJ2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim8Q99PJ2 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.02■□□□□ 0.96
Trim8Q99PJ2 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim8Q99PJ2 Gm22567-201ENSMUST00000175542 342 ntBASIC21.02■□□□□ 0.96
Trim8Q99PJ2 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim8Q99PJ2 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Trim8Q99PJ2 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim8Q99PJ2 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim8Q99PJ2 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim8Q99PJ2 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim8Q99PJ2 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.01■□□□□ 0.95
Trim8Q99PJ2 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim8Q99PJ2 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim8Q99PJ2 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim8Q99PJ2 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim8Q99PJ2 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim8Q99PJ2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Trim8Q99PJ2 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21■□□□□ 0.95
Trim8Q99PJ2 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21■□□□□ 0.95
Trim8Q99PJ2 Gm12504-201ENSMUST00000120860 2231 ntBASIC21■□□□□ 0.95
Trim8Q99PJ2 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Trim8Q99PJ2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Trim8Q99PJ2 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Trim8Q99PJ2 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim8Q99PJ2 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim8Q99PJ2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Trim8Q99PJ2 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim8Q99PJ2 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
Trim8Q99PJ2 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim8Q99PJ2 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim8Q99PJ2 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim8Q99PJ2 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.97■□□□□ 0.95
Trim8Q99PJ2 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim8Q99PJ2 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Trim8Q99PJ2 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim8Q99PJ2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim8Q99PJ2 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim8Q99PJ2 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim8Q99PJ2 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim8Q99PJ2 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim8Q99PJ2 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim8Q99PJ2 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
Trim8Q99PJ2 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.95■□□□□ 0.94
Trim8Q99PJ2 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Trim8Q99PJ2 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim8Q99PJ2 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim8Q99PJ2 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim8Q99PJ2 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Trim8Q99PJ2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim8Q99PJ2 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
Trim8Q99PJ2 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim8Q99PJ2 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.94■□□□□ 0.94
Trim8Q99PJ2 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim8Q99PJ2 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim8Q99PJ2 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim8Q99PJ2 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trim8Q99PJ2 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim8Q99PJ2 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.92■□□□□ 0.94
Trim8Q99PJ2 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms