Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Lsm1Q8VC85 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.74■□□□□ 0.91
Lsm1Q8VC85 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.74■□□□□ 0.91
Lsm1Q8VC85 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lsm1Q8VC85 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.74■□□□□ 0.91
Lsm1Q8VC85 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lsm1Q8VC85 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lsm1Q8VC85 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Lsm1Q8VC85 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.73■□□□□ 0.91
Lsm1Q8VC85 Gm16437-201ENSMUST00000025669 507 ntBASIC20.73■□□□□ 0.91
Lsm1Q8VC85 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Lsm1Q8VC85 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Lsm1Q8VC85 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Lsm1Q8VC85 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Lsm1Q8VC85 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Lsm1Q8VC85 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lsm1Q8VC85 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lsm1Q8VC85 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Lsm1Q8VC85 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.71■□□□□ 0.91
Lsm1Q8VC85 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Lsm1Q8VC85 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Lsm1Q8VC85 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.69■□□□□ 0.9
Lsm1Q8VC85 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lsm1Q8VC85 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lsm1Q8VC85 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.69■□□□□ 0.9
Lsm1Q8VC85 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Lsm1Q8VC85 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Lsm1Q8VC85 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lsm1Q8VC85 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lsm1Q8VC85 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.68■□□□□ 0.9
Lsm1Q8VC85 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lsm1Q8VC85 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.68■□□□□ 0.9
Lsm1Q8VC85 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lsm1Q8VC85 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lsm1Q8VC85 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Lsm1Q8VC85 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lsm1Q8VC85 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.67■□□□□ 0.9
Lsm1Q8VC85 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lsm1Q8VC85 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Lsm1Q8VC85 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lsm1Q8VC85 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.67■□□□□ 0.9
Lsm1Q8VC85 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lsm1Q8VC85 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lsm1Q8VC85 Gm11687-201ENSMUST00000118911 886 ntBASIC20.65■□□□□ 0.9
Lsm1Q8VC85 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.65■□□□□ 0.9
Lsm1Q8VC85 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lsm1Q8VC85 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lsm1Q8VC85 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lsm1Q8VC85 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.64■□□□□ 0.89
Lsm1Q8VC85 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Lsm1Q8VC85 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lsm1Q8VC85 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Lsm1Q8VC85 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
Lsm1Q8VC85 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lsm1Q8VC85 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Lsm1Q8VC85 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Lsm1Q8VC85 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.61■□□□□ 0.89
Lsm1Q8VC85 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Lsm1Q8VC85 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Lsm1Q8VC85 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Lsm1Q8VC85 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lsm1Q8VC85 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lsm1Q8VC85 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.6■□□□□ 0.89
Lsm1Q8VC85 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Lsm1Q8VC85 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Lsm1Q8VC85 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Lsm1Q8VC85 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lsm1Q8VC85 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lsm1Q8VC85 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Lsm1Q8VC85 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 101.8 ms