Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ushbp1Q8R370 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ushbp1Q8R370 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
Ushbp1Q8R370 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ushbp1Q8R370 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Ushbp1Q8R370 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Ushbp1Q8R370 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ushbp1Q8R370 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ushbp1Q8R370 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ushbp1Q8R370 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ushbp1Q8R370 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
Ushbp1Q8R370 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ushbp1Q8R370 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC24.2■■□□□ 1.47
Ushbp1Q8R370 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
Ushbp1Q8R370 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Ushbp1Q8R370 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ushbp1Q8R370 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ushbp1Q8R370 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ushbp1Q8R370 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ushbp1Q8R370 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ushbp1Q8R370 Gm15820-201ENSMUST00000201566 728 ntBASIC24.19■■□□□ 1.46
Ushbp1Q8R370 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC24.19■■□□□ 1.46
Ushbp1Q8R370 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Ushbp1Q8R370 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
Ushbp1Q8R370 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ushbp1Q8R370 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Ushbp1Q8R370 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC24.18■■□□□ 1.46
Ushbp1Q8R370 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC24.17■■□□□ 1.46
Ushbp1Q8R370 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Ushbp1Q8R370 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ushbp1Q8R370 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ushbp1Q8R370 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
Ushbp1Q8R370 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Ushbp1Q8R370 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ushbp1Q8R370 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC24.16■■□□□ 1.46
Ushbp1Q8R370 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ushbp1Q8R370 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ushbp1Q8R370 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
Ushbp1Q8R370 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Ushbp1Q8R370 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ushbp1Q8R370 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ushbp1Q8R370 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ushbp1Q8R370 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Ushbp1Q8R370 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ushbp1Q8R370 Gm13238-201ENSMUST00000117655 780 ntBASIC24.14■■□□□ 1.45
Ushbp1Q8R370 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Ushbp1Q8R370 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
Ushbp1Q8R370 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Ushbp1Q8R370 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Ushbp1Q8R370 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
Ushbp1Q8R370 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Ushbp1Q8R370 Rps24-207ENSMUST00000224568 714 ntBASIC24.13■■□□□ 1.45
Ushbp1Q8R370 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC24.13■■□□□ 1.45
Ushbp1Q8R370 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ushbp1Q8R370 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ushbp1Q8R370 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ushbp1Q8R370 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ushbp1Q8R370 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC24.11■■□□□ 1.45
Ushbp1Q8R370 Nsd1-203ENSMUST00000224156 1149 ntBASIC24.11■■□□□ 1.45
Ushbp1Q8R370 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ushbp1Q8R370 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ushbp1Q8R370 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC24.1■■□□□ 1.45
Ushbp1Q8R370 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Ushbp1Q8R370 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC24.1■■□□□ 1.45
Ushbp1Q8R370 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Ushbp1Q8R370 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Ushbp1Q8R370 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ushbp1Q8R370 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC24.09■■□□□ 1.45
Ushbp1Q8R370 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
Ushbp1Q8R370 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Ushbp1Q8R370 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ushbp1Q8R370 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ushbp1Q8R370 AC115037.1-201ENSMUST00000223391 2173 ntBASIC24.09■■□□□ 1.45
Ushbp1Q8R370 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ushbp1Q8R370 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC24.07■■□□□ 1.44
Ushbp1Q8R370 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ushbp1Q8R370 Gm43592-201ENSMUST00000196922 1165 ntBASIC24.06■■□□□ 1.44
Ushbp1Q8R370 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ushbp1Q8R370 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ushbp1Q8R370 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Ushbp1Q8R370 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Ushbp1Q8R370 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
Ushbp1Q8R370 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC24.05■■□□□ 1.44
Ushbp1Q8R370 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC24.05■■□□□ 1.44
Ushbp1Q8R370 Gm43566-201ENSMUST00000196851 808 ntBASIC24.05■■□□□ 1.44
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms