Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nkx3-1P97436 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nkx3-1P97436 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx3-1P97436 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Nkx3-1P97436 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nkx3-1P97436 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC18.72■□□□□ 0.59
Nkx3-1P97436 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx3-1P97436 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.71■□□□□ 0.59
Nkx3-1P97436 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.71■□□□□ 0.59
Nkx3-1P97436 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx3-1P97436 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nkx3-1P97436 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.7■□□□□ 0.58
Nkx3-1P97436 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nkx3-1P97436 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx3-1P97436 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx3-1P97436 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nkx3-1P97436 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx3-1P97436 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.68■□□□□ 0.58
Nkx3-1P97436 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx3-1P97436 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Nkx3-1P97436 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx3-1P97436 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx3-1P97436 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nkx3-1P97436 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC18.67■□□□□ 0.58
Nkx3-1P97436 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx3-1P97436 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx3-1P97436 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.67■□□□□ 0.58
Nkx3-1P97436 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx3-1P97436 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx3-1P97436 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nkx3-1P97436 AC117245.4-201ENSMUST00000217388 1646 ntBASIC18.67■□□□□ 0.58
Nkx3-1P97436 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.66■□□□□ 0.58
Nkx3-1P97436 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nkx3-1P97436 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nkx3-1P97436 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nkx3-1P97436 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nkx3-1P97436 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nkx3-1P97436 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nkx3-1P97436 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Nkx3-1P97436 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Nkx3-1P97436 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nkx3-1P97436 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nkx3-1P97436 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nkx3-1P97436 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Nkx3-1P97436 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Nkx3-1P97436 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC18.64■□□□□ 0.57
Nkx3-1P97436 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Nkx3-1P97436 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Nkx3-1P97436 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nkx3-1P97436 Gm11847-201ENSMUST00000125165 1119 ntBASIC18.63■□□□□ 0.57
Nkx3-1P97436 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Nkx3-1P97436 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nkx3-1P97436 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nkx3-1P97436 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.63■□□□□ 0.57
Nkx3-1P97436 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.63■□□□□ 0.57
Nkx3-1P97436 Gm40881-201ENSMUST00000223397 166 ntBASIC18.63■□□□□ 0.57
Nkx3-1P97436 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Nkx3-1P97436 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nkx3-1P97436 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Nkx3-1P97436 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nkx3-1P97436 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.62■□□□□ 0.57
Nkx3-1P97436 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.62■□□□□ 0.57
Nkx3-1P97436 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.62■□□□□ 0.57
Nkx3-1P97436 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.62■□□□□ 0.57
Nkx3-1P97436 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Nkx3-1P97436 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nkx3-1P97436 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Nkx3-1P97436 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.62■□□□□ 0.57
Nkx3-1P97436 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nkx3-1P97436 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Nkx3-1P97436 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nkx3-1P97436 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nkx3-1P97436 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Nkx3-1P97436 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nkx3-1P97436 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nkx3-1P97436 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Nkx3-1P97436 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.61■□□□□ 0.57
Nkx3-1P97436 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nkx3-1P97436 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Nkx3-1P97436 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms