Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx2-1P50220 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Nkx2-1P50220 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx2-1P50220 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC17.84■□□□□ 0.45
Nkx2-1P50220 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nkx2-1P50220 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nkx2-1P50220 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC17.83■□□□□ 0.44
Nkx2-1P50220 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nkx2-1P50220 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
Nkx2-1P50220 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx2-1P50220 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx2-1P50220 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.82■□□□□ 0.44
Nkx2-1P50220 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx2-1P50220 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Nkx2-1P50220 Gm22567-201ENSMUST00000175542 342 ntBASIC17.82■□□□□ 0.44
Nkx2-1P50220 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx2-1P50220 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx2-1P50220 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
Nkx2-1P50220 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.81■□□□□ 0.44
Nkx2-1P50220 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC17.81■□□□□ 0.44
Nkx2-1P50220 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx2-1P50220 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
Nkx2-1P50220 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx2-1P50220 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-1P50220 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-1P50220 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-1P50220 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-1P50220 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.8■□□□□ 0.44
Nkx2-1P50220 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx2-1P50220 AC115037.1-201ENSMUST00000223391 2173 ntBASIC17.8■□□□□ 0.44
Nkx2-1P50220 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nkx2-1P50220 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Nkx2-1P50220 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-1P50220 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC17.78■□□□□ 0.44
Nkx2-1P50220 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-1P50220 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-1P50220 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nkx2-1P50220 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC17.78■□□□□ 0.44
Nkx2-1P50220 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Nkx2-1P50220 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC17.77■□□□□ 0.44
Nkx2-1P50220 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nkx2-1P50220 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nkx2-1P50220 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Nkx2-1P50220 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Nkx2-1P50220 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-1P50220 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-1P50220 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-1P50220 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-1P50220 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nkx2-1P50220 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Nkx2-1P50220 Gm37415-201ENSMUST00000192265 2054 ntBASIC17.75■□□□□ 0.43
Nkx2-1P50220 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
Nkx2-1P50220 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Nkx2-1P50220 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.74■□□□□ 0.43
Nkx2-1P50220 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC17.74■□□□□ 0.43
Nkx2-1P50220 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Nkx2-1P50220 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC17.74■□□□□ 0.43
Nkx2-1P50220 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Nkx2-1P50220 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Nkx2-1P50220 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Nkx2-1P50220 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx2-1P50220 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC17.71■□□□□ 0.43
Nkx2-1P50220 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.71■□□□□ 0.43
Nkx2-1P50220 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx2-1P50220 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Nkx2-1P50220 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms