Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Msx1P13297 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.41■□□□□ 0.86
Msx1P13297 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.41■□□□□ 0.86
Msx1P13297 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.41■□□□□ 0.86
Msx1P13297 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Msx1P13297 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Msx1P13297 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Msx1P13297 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Msx1P13297 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Msx1P13297 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Msx1P13297 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.39■□□□□ 0.85
Msx1P13297 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.38■□□□□ 0.85
Msx1P13297 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Msx1P13297 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Msx1P13297 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Msx1P13297 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Msx1P13297 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msx1P13297 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msx1P13297 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msx1P13297 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.37■□□□□ 0.85
Msx1P13297 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Msx1P13297 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Msx1P13297 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Msx1P13297 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Msx1P13297 Etf1-202ENSMUST00000180351 108 ntBASIC20.36■□□□□ 0.85
Msx1P13297 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.36■□□□□ 0.85
Msx1P13297 Gm10232-201ENSMUST00000089221 720 ntBASIC20.36■□□□□ 0.85
Msx1P13297 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Msx1P13297 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.36■□□□□ 0.85
Msx1P13297 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.36■□□□□ 0.85
Msx1P13297 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msx1P13297 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msx1P13297 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Msx1P13297 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Msx1P13297 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msx1P13297 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msx1P13297 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Msx1P13297 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Msx1P13297 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msx1P13297 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msx1P13297 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Msx1P13297 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Msx1P13297 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Msx1P13297 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Msx1P13297 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Msx1P13297 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC20.33■□□□□ 0.85
Msx1P13297 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Msx1P13297 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Msx1P13297 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Msx1P13297 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.33■□□□□ 0.84
Msx1P13297 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Msx1P13297 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Msx1P13297 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.32■□□□□ 0.84
Msx1P13297 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Msx1P13297 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Msx1P13297 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Msx1P13297 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Msx1P13297 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Msx1P13297 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Msx1P13297 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Msx1P13297 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.31■□□□□ 0.84
Msx1P13297 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.31■□□□□ 0.84
Msx1P13297 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.3■□□□□ 0.84
Msx1P13297 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Msx1P13297 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Msx1P13297 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msx1P13297 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Msx1P13297 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msx1P13297 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Msx1P13297 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Msx1P13297 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msx1P13297 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msx1P13297 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msx1P13297 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.28■□□□□ 0.84
Msx1P13297 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Msx1P13297 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msx1P13297 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Msx1P13297 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msx1P13297 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms