Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Hmgb3O54879 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.93■□□□□ 0.46
Hmgb3O54879 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Hmgb3O54879 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.92■□□□□ 0.46
Hmgb3O54879 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb3O54879 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb3O54879 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Hmgb3O54879 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb3O54879 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC17.91■□□□□ 0.46
Hmgb3O54879 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Hmgb3O54879 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb3O54879 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb3O54879 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb3O54879 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Hmgb3O54879 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
Hmgb3O54879 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Hmgb3O54879 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Hmgb3O54879 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC17.89■□□□□ 0.45
Hmgb3O54879 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb3O54879 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb3O54879 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Hmgb3O54879 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb3O54879 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Hmgb3O54879 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb3O54879 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Hmgb3O54879 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC17.88■□□□□ 0.45
Hmgb3O54879 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.87■□□□□ 0.45
Hmgb3O54879 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Hmgb3O54879 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Hmgb3O54879 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb3O54879 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb3O54879 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC17.87■□□□□ 0.45
Hmgb3O54879 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Hmgb3O54879 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC17.86■□□□□ 0.45
Hmgb3O54879 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.86■□□□□ 0.45
Hmgb3O54879 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
Hmgb3O54879 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC17.86■□□□□ 0.45
Hmgb3O54879 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb3O54879 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb3O54879 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb3O54879 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb3O54879 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb3O54879 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC17.85■□□□□ 0.45
Hmgb3O54879 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.85■□□□□ 0.45
Hmgb3O54879 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb3O54879 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb3O54879 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Hmgb3O54879 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb3O54879 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb3O54879 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb3O54879 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb3O54879 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb3O54879 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.83■□□□□ 0.44
Hmgb3O54879 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC17.83■□□□□ 0.44
Hmgb3O54879 Gm45855-201ENSMUST00000212546 880 ntBASIC17.83■□□□□ 0.44
Hmgb3O54879 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Hmgb3O54879 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb3O54879 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.82■□□□□ 0.44
Hmgb3O54879 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb3O54879 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb3O54879 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
Hmgb3O54879 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb3O54879 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb3O54879 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb3O54879 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC17.81■□□□□ 0.44
Hmgb3O54879 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Hmgb3O54879 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Hmgb3O54879 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb3O54879 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb3O54879 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb3O54879 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb3O54879 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb3O54879 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb3O54879 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb3O54879 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Hmgb3O54879 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb3O54879 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb3O54879 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms