Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd6A3KFM7 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd6A3KFM7 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chd6A3KFM7 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.19■□□□□ 0.5
Chd6A3KFM7 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd6A3KFM7 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC18.18■□□□□ 0.5
Chd6A3KFM7 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd6A3KFM7 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd6A3KFM7 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chd6A3KFM7 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.18■□□□□ 0.5
Chd6A3KFM7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.18■□□□□ 0.5
Chd6A3KFM7 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chd6A3KFM7 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Chd6A3KFM7 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.17■□□□□ 0.5
Chd6A3KFM7 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd6A3KFM7 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd6A3KFM7 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd6A3KFM7 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.17■□□□□ 0.5
Chd6A3KFM7 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
Chd6A3KFM7 Gm42569-201ENSMUST00000200539 472 ntBASIC18.16■□□□□ 0.5
Chd6A3KFM7 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Gm27801-201ENSMUST00000184174 223 ntBASIC18.16■□□□□ 0.5
Chd6A3KFM7 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Chd6A3KFM7 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC18.16■□□□□ 0.5
Chd6A3KFM7 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.15■□□□□ 0.5
Chd6A3KFM7 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC18.15■□□□□ 0.5
Chd6A3KFM7 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chd6A3KFM7 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chd6A3KFM7 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Chd6A3KFM7 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chd6A3KFM7 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Chd6A3KFM7 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Chd6A3KFM7 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.14■□□□□ 0.5
Chd6A3KFM7 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.14■□□□□ 0.5
Chd6A3KFM7 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Chd6A3KFM7 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Chd6A3KFM7 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd6A3KFM7 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd6A3KFM7 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chd6A3KFM7 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd6A3KFM7 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.14■□□□□ 0.49
Chd6A3KFM7 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.14■□□□□ 0.49
Chd6A3KFM7 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd6A3KFM7 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd6A3KFM7 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.13■□□□□ 0.49
Chd6A3KFM7 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chd6A3KFM7 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd6A3KFM7 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd6A3KFM7 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Chd6A3KFM7 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd6A3KFM7 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd6A3KFM7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Chd6A3KFM7 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Chd6A3KFM7 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Chd6A3KFM7 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.12■□□□□ 0.49
Chd6A3KFM7 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC18.11■□□□□ 0.49
Chd6A3KFM7 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.11■□□□□ 0.49
Chd6A3KFM7 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.11■□□□□ 0.49
Chd6A3KFM7 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd6A3KFM7 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Chd6A3KFM7 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd6A3KFM7 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd6A3KFM7 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd6A3KFM7 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.1■□□□□ 0.49
Chd6A3KFM7 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd6A3KFM7 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Chd6A3KFM7 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd6A3KFM7 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Chd6A3KFM7 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Chd6A3KFM7 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Chd6A3KFM7 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.1■□□□□ 0.49
Chd6A3KFM7 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd6A3KFM7 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
Chd6A3KFM7 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
Chd6A3KFM7 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Chd6A3KFM7 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
Chd6A3KFM7 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Chd6A3KFM7 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Chd6A3KFM7 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Chd6A3KFM7 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.08■□□□□ 0.48
Chd6A3KFM7 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Chd6A3KFM7 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.08■□□□□ 0.48
Chd6A3KFM7 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Chd6A3KFM7 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd6A3KFM7 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Chd6A3KFM7 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.07■□□□□ 0.48
Chd6A3KFM7 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Chd6A3KFM7 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd6A3KFM7 Gm7977-201ENSMUST00000193787 748 ntBASIC18.07■□□□□ 0.48
Chd6A3KFM7 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd6A3KFM7 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Chd6A3KFM7 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.06■□□□□ 0.48
Chd6A3KFM7 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.06■□□□□ 0.48
Chd6A3KFM7 Gm42642-201ENSMUST00000200683 355 ntBASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms