Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv5A0A0B4J1G9 AC164433.2-201ENSMUST00000226346 1701 ntBASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trbv5A0A0B4J1G9 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv5A0A0B4J1G9 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC17.34■□□□□ 0.37
Trbv5A0A0B4J1G9 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv5A0A0B4J1G9 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv5A0A0B4J1G9 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trbv5A0A0B4J1G9 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trbv5A0A0B4J1G9 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv5A0A0B4J1G9 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv5A0A0B4J1G9 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv5A0A0B4J1G9 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv5A0A0B4J1G9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv5A0A0B4J1G9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv5A0A0B4J1G9 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC17.31■□□□□ 0.36
Trbv5A0A0B4J1G9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
Trbv5A0A0B4J1G9 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv5A0A0B4J1G9 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv5A0A0B4J1G9 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv5A0A0B4J1G9 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv5A0A0B4J1G9 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv5A0A0B4J1G9 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Trbv5A0A0B4J1G9 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Trbv5A0A0B4J1G9 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv5A0A0B4J1G9 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv5A0A0B4J1G9 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.28■□□□□ 0.36
Trbv5A0A0B4J1G9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv5A0A0B4J1G9 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv5A0A0B4J1G9 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv5A0A0B4J1G9 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv5A0A0B4J1G9 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.27■□□□□ 0.36
Trbv5A0A0B4J1G9 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv5A0A0B4J1G9 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trbv5A0A0B4J1G9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv5A0A0B4J1G9 Gm22567-201ENSMUST00000175542 342 ntBASIC17.27■□□□□ 0.36
Trbv5A0A0B4J1G9 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv5A0A0B4J1G9 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv5A0A0B4J1G9 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv5A0A0B4J1G9 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Gm45855-201ENSMUST00000212546 880 ntBASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Trbv5A0A0B4J1G9 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv5A0A0B4J1G9 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv5A0A0B4J1G9 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv5A0A0B4J1G9 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv5A0A0B4J1G9 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv5A0A0B4J1G9 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv5A0A0B4J1G9 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv5A0A0B4J1G9 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv5A0A0B4J1G9 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv5A0A0B4J1G9 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv5A0A0B4J1G9 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv5A0A0B4J1G9 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv5A0A0B4J1G9 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv5A0A0B4J1G9 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv5A0A0B4J1G9 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
Trbv5A0A0B4J1G9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC17.22■□□□□ 0.35
Trbv5A0A0B4J1G9 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC17.22■□□□□ 0.35
Trbv5A0A0B4J1G9 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Trbv5A0A0B4J1G9 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC17.22■□□□□ 0.35
Trbv5A0A0B4J1G9 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv5A0A0B4J1G9 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms