Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6-1A0A075B5Z8 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6-1A0A075B5Z8 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Trav6-1A0A075B5Z8 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC17.39■□□□□ 0.38
Trav6-1A0A075B5Z8 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.39■□□□□ 0.37
Trav6-1A0A075B5Z8 Gm20634-201ENSMUST00000090779 2956 ntBASIC17.39■□□□□ 0.37
Trav6-1A0A075B5Z8 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav6-1A0A075B5Z8 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trav6-1A0A075B5Z8 Gm45364-201ENSMUST00000210883 159 ntBASIC17.39■□□□□ 0.37
Trav6-1A0A075B5Z8 Gm42418-201ENSMUST00000182010 1831 ntBASIC17.39■□□□□ 0.37
Trav6-1A0A075B5Z8 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav6-1A0A075B5Z8 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-1A0A075B5Z8 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-1A0A075B5Z8 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-1A0A075B5Z8 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC17.36■□□□□ 0.37
Trav6-1A0A075B5Z8 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-1A0A075B5Z8 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-1A0A075B5Z8 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-1A0A075B5Z8 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-1A0A075B5Z8 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trav6-1A0A075B5Z8 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-1A0A075B5Z8 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-1A0A075B5Z8 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-1A0A075B5Z8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Trav6-1A0A075B5Z8 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-1A0A075B5Z8 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Trav6-1A0A075B5Z8 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trav6-1A0A075B5Z8 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-1A0A075B5Z8 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-1A0A075B5Z8 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-1A0A075B5Z8 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav6-1A0A075B5Z8 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Trav6-1A0A075B5Z8 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC17.33■□□□□ 0.37
Trav6-1A0A075B5Z8 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trav6-1A0A075B5Z8 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC17.33■□□□□ 0.36
Trav6-1A0A075B5Z8 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trav6-1A0A075B5Z8 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav6-1A0A075B5Z8 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Trav6-1A0A075B5Z8 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav6-1A0A075B5Z8 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Trav6-1A0A075B5Z8 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav6-1A0A075B5Z8 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav6-1A0A075B5Z8 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Trav6-1A0A075B5Z8 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC17.32■□□□□ 0.36
Trav6-1A0A075B5Z8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-1A0A075B5Z8 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav6-1A0A075B5Z8 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav6-1A0A075B5Z8 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav6-1A0A075B5Z8 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav6-1A0A075B5Z8 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav6-1A0A075B5Z8 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
Trav6-1A0A075B5Z8 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Trav6-1A0A075B5Z8 AC124392.1-201ENSMUST00000225172 5324 ntBASIC17.28■□□□□ 0.36
Trav6-1A0A075B5Z8 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.28■□□□□ 0.36
Trav6-1A0A075B5Z8 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav6-1A0A075B5Z8 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trav6-1A0A075B5Z8 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trav6-1A0A075B5Z8 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Trav6-1A0A075B5Z8 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-1A0A075B5Z8 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-1A0A075B5Z8 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-1A0A075B5Z8 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms