Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Brf1Q8CFK2 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Gm6473-201ENSMUST00000188572 1210 ntBASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Brf1Q8CFK2 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Gm5279-201ENSMUST00000199575 745 ntBASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Brf1Q8CFK2 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
Brf1Q8CFK2 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Brf1Q8CFK2 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms