Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.02■□□□□ -0
Lig3P97386 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Lig3P97386 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC15.02□□□□□ -0.01
Lig3P97386 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lig3P97386 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lig3P97386 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.02□□□□□ -0.01
Lig3P97386 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Lig3P97386 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lig3P97386 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Lig3P97386 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lig3P97386 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lig3P97386 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Lig3P97386 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lig3P97386 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
Lig3P97386 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Lig3P97386 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC15.01□□□□□ -0.01
Lig3P97386 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Gm9229-201ENSMUST00000222777 126 ntBASIC15.01□□□□□ -0.01
Lig3P97386 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.01□□□□□ -0.01
Lig3P97386 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lig3P97386 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15□□□□□ -0.01
Lig3P97386 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC15□□□□□ -0.01
Lig3P97386 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Lig3P97386 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Lig3P97386 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Lig3P97386 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC15□□□□□ -0.01
Lig3P97386 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15□□□□□ -0.01
Lig3P97386 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Lig3P97386 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15□□□□□ -0.01
Lig3P97386 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm29310-201ENSMUST00000185468 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21825-201ENSMUST00000185728 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm29109-201ENSMUST00000185895 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21896-201ENSMUST00000186520 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21873-201ENSMUST00000186728 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21794-201ENSMUST00000187056 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21880-201ENSMUST00000187275 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21826-201ENSMUST00000187451 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21198-201ENSMUST00000188393 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21749-201ENSMUST00000189343 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21901-201ENSMUST00000189568 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm29424-201ENSMUST00000189716 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm28599-201ENSMUST00000189838 694 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21867-201ENSMUST00000189917 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm29269-201ENSMUST00000190087 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21722-201ENSMUST00000190153 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm28423-201ENSMUST00000190701 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21899-201ENSMUST00000190745 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21910-201ENSMUST00000191163 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21849-201ENSMUST00000191571 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm28678-201ENSMUST00000191593 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm20910-201ENSMUST00000193268 696 ntBASIC15□□□□□ -0.01
Lig3P97386 Gm21871-201ENSMUST00000194621 696 ntBASIC15□□□□□ -0.01
Lig3P97386 AC165157.4-201ENSMUST00000220587 139 ntBASIC15□□□□□ -0.01
Lig3P97386 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Lig3P97386 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Lig3P97386 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15□□□□□ -0.01
Lig3P97386 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Lig3P97386 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Lig3P97386 Gm9200-201ENSMUST00000118513 1354 ntBASIC14.99□□□□□ -0.01
Lig3P97386 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
Lig3P97386 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lig3P97386 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lig3P97386 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lig3P97386 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lig3P97386 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Lig3P97386 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lig3P97386 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Lig3P97386 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms