Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Prpf40aQ9R1C7 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Mir7684-201ENSMUST00000183858 60 ntBASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Gm27989-201ENSMUST00000184721 107 ntBASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Gm43703-201ENSMUST00000200523 763 ntBASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Prpf40aQ9R1C7 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Gm4204-201ENSMUST00000110798 1231 ntBASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Cd63-ps-201ENSMUST00000145417 875 ntBASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Gm9347-201ENSMUST00000211473 1607 ntBASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Prpf40aQ9R1C7 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Gm4804-201ENSMUST00000182234 999 ntBASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Gm21470-201ENSMUST00000187680 696 ntBASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Gm44882-201ENSMUST00000205702 802 ntBASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Gm5425-201ENSMUST00000214125 459 ntBASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Prpf40aQ9R1C7 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Prpf40aQ9R1C7 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms