Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 AC025913.2-201ENSMUST00000220136 1766 ntBASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 AC126549.2-201ENSMUST00000223997 1976 ntBASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Gm10252-201ENSMUST00000209541 832 ntBASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
RTRAFQ9CQE8 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Gm8597-201ENSMUST00000191525 1109 ntBASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
RTRAFQ9CQE8 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.63
RTRAFQ9CQE8 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
RTRAFQ9CQE8 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
RTRAFQ9CQE8 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.63
RTRAFQ9CQE8 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
RTRAFQ9CQE8 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC11.14□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms