Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gm3436-201ENSMUST00000179930 840 ntBASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gm27618-201ENSMUST00000183671 60 ntBASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gm27680-201ENSMUST00000184192 160 ntBASIC15.67■□□□□ 0.1
Trim11Q99PQ2 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gm5425-201ENSMUST00000214125 459 ntBASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim11Q99PQ2 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gm12585-201ENSMUST00000117307 290 ntBASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gm11557-201ENSMUST00000120200 1008 ntBASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gm8927-201ENSMUST00000181978 981 ntBASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gm3222-201ENSMUST00000071282 990 ntBASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Trim11Q99PQ2 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Gm13385-201ENSMUST00000121089 220 ntBASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Gm37171-201ENSMUST00000192636 1185 ntBASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Gm10766-202ENSMUST00000194123 606 ntBASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim11Q99PQ2 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms