Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 AC139054.1-201ENSMUST00000226898 1598 ntBASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Gm11424-201ENSMUST00000121929 829 ntBASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Gm25144-201ENSMUST00000179561 110 ntBASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Gm25352-201ENSMUST00000179815 110 ntBASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 AC124751.1-201ENSMUST00000222716 1408 ntBASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Sh3rf1Q69ZI1 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Mir7684-201ENSMUST00000183858 60 ntBASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Gm9182-201ENSMUST00000217829 639 ntBASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Gm38577-201ENSMUST00000221531 4545 ntBASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Sh3rf1Q69ZI1 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Sh3rf1Q69ZI1 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 AC158529.1-201ENSMUST00000223618 239 ntBASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 AC140375.2-201ENSMUST00000225283 584 ntBASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms