Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.57□□□□□ -0.4
Cdh11P55288 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Cdh11P55288 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Cdh11P55288 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Cdh11P55288 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Cdh11P55288 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC12.56□□□□□ -0.4
Cdh11P55288 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC12.56□□□□□ -0.4
Cdh11P55288 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC12.56□□□□□ -0.4
Cdh11P55288 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Cdh11P55288 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Cdh11P55288 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cdh11P55288 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdh11P55288 AC139054.1-201ENSMUST00000226898 1598 ntBASIC12.56□□□□□ -0.4
Cdh11P55288 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Cdh11P55288 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Cdh11P55288 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC12.55□□□□□ -0.4
Cdh11P55288 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Cdh11P55288 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Cdh11P55288 Gm15693-201ENSMUST00000120470 637 ntBASIC12.55□□□□□ -0.4
Cdh11P55288 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.55□□□□□ -0.4
Cdh11P55288 Gm17837-201ENSMUST00000186435 985 ntBASIC12.55□□□□□ -0.4
Cdh11P55288 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Cdh11P55288 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Cdh11P55288 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdh11P55288 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Cdh11P55288 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC12.54□□□□□ -0.4
Cdh11P55288 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 Gm37277-201ENSMUST00000194052 1111 ntBASIC12.54□□□□□ -0.4
Cdh11P55288 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdh11P55288 AC154595.3-201ENSMUST00000224579 384 ntBASIC12.54□□□□□ -0.4
Cdh11P55288 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms