Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 AL391825.1-201ENST00000457671 1364 ntBASIC18.2■□□□□ 0.5
HIPK3Q9H422 AC073439.1-201ENST00000624121 1774 ntBASIC18.2■□□□□ 0.5
HIPK3Q9H422 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 FRMD8P1-201ENST00000440433 1524 ntBASIC18.2■□□□□ 0.5
HIPK3Q9H422 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 SLC25A1P3-201ENST00000395415 828 ntBASIC18.2■□□□□ 0.5
HIPK3Q9H422 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 BANF1P1-201ENST00000553684 263 ntBASIC18.2■□□□□ 0.5
HIPK3Q9H422 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIPK3Q9H422 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HIPK3Q9H422 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 BICD1-207ENST00000551848 1962 ntBASIC18.19■□□□□ 0.5
HIPK3Q9H422 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 AL080243.2-201ENST00000418783 582 ntBASIC18.19■□□□□ 0.5
HIPK3Q9H422 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 RNA5SP410-201ENST00000516285 106 ntBASIC18.19■□□□□ 0.5
HIPK3Q9H422 AL079307.3-201ENST00000556114 283 ntBASIC18.19■□□□□ 0.5
HIPK3Q9H422 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 AL162274.1-201ENST00000617191 1098 ntBASIC18.19■□□□□ 0.5
HIPK3Q9H422 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.19■□□□□ 0.5
HIPK3Q9H422 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIPK3Q9H422 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 AC016396.2-201ENST00000562575 1417 ntBASIC18.18■□□□□ 0.5
HIPK3Q9H422 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 AC011495.1-201ENST00000498085 584 ntBASIC18.18■□□□□ 0.5
HIPK3Q9H422 AC098859.1-201ENST00000502915 1238 ntBASIC18.18■□□□□ 0.5
HIPK3Q9H422 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 AC132938.2-201ENST00000579188 680 ntBASIC18.18■□□□□ 0.5
HIPK3Q9H422 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 AL133215.2-201ENST00000609242 977 ntBASIC18.18■□□□□ 0.5
HIPK3Q9H422 AL591163.1-201ENST00000641757 987 ntBASIC18.18■□□□□ 0.5
HIPK3Q9H422 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIPK3Q9H422 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.18■□□□□ 0.5
HIPK3Q9H422 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HIPK3Q9H422 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.17■□□□□ 0.5
HIPK3Q9H422 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms