Protein–RNA interactions for Protein: Q9CWY9

Rpain, RPA-interacting protein, mousemouse

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RpainQ9CWY9 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Gm38102-201ENSMUST00000192791 1935 ntBASIC14.43□□□□□ -0.1
RpainQ9CWY9 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RpainQ9CWY9 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC14.42□□□□□ -0.1
RpainQ9CWY9 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.42□□□□□ -0.1
RpainQ9CWY9 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm27622-201ENSMUST00000183779 60 ntBASIC14.42□□□□□ -0.1
RpainQ9CWY9 Mir7023-201ENSMUST00000185093 64 ntBASIC14.42□□□□□ -0.1
RpainQ9CWY9 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.42□□□□□ -0.1
RpainQ9CWY9 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.42□□□□□ -0.1
RpainQ9CWY9 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RpainQ9CWY9 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Gm42934-201ENSMUST00000196920 1345 ntBASIC14.41□□□□□ -0.1
RpainQ9CWY9 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Gm9824-201ENSMUST00000178707 561 ntBASIC14.41□□□□□ -0.1
RpainQ9CWY9 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.41□□□□□ -0.1
RpainQ9CWY9 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC14.41□□□□□ -0.1
RpainQ9CWY9 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RpainQ9CWY9 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Gm6415-201ENSMUST00000118488 348 ntBASIC14.4□□□□□ -0.1
RpainQ9CWY9 Gm15693-201ENSMUST00000120470 637 ntBASIC14.4□□□□□ -0.1
RpainQ9CWY9 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RpainQ9CWY9 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms