Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.82■□□□□ 0.44
Col18a1P39061 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC17.81■□□□□ 0.44
Col18a1P39061 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC17.81■□□□□ 0.44
Col18a1P39061 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC17.81■□□□□ 0.44
Col18a1P39061 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC17.81■□□□□ 0.44
Col18a1P39061 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Col18a1P39061 Gm6161-201ENSMUST00000121942 1102 ntBASIC17.81■□□□□ 0.44
Col18a1P39061 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Col18a1P39061 Gm6254-201ENSMUST00000168178 1072 ntBASIC17.81■□□□□ 0.44
Col18a1P39061 Gm6153-201ENSMUST00000172004 1058 ntBASIC17.81■□□□□ 0.44
Col18a1P39061 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col18a1P39061 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Col18a1P39061 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC17.81■□□□□ 0.44
Col18a1P39061 Gm5641-202ENSMUST00000198699 1080 ntBASIC17.81■□□□□ 0.44
Col18a1P39061 AC159819.2-201ENSMUST00000216151 342 ntBASIC17.81■□□□□ 0.44
Col18a1P39061 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
Col18a1P39061 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.81■□□□□ 0.44
Col18a1P39061 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Col18a1P39061 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col18a1P39061 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col18a1P39061 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.8■□□□□ 0.44
Col18a1P39061 Gm12058-201ENSMUST00000118614 437 ntBASIC17.8■□□□□ 0.44
Col18a1P39061 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC17.8■□□□□ 0.44
Col18a1P39061 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC17.8■□□□□ 0.44
Col18a1P39061 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
Col18a1P39061 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Col18a1P39061 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col18a1P39061 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Col18a1P39061 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Col18a1P39061 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC17.79■□□□□ 0.44
Col18a1P39061 AC154222.2-201ENSMUST00000225848 607 ntBASIC17.79■□□□□ 0.44
Col18a1P39061 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col18a1P39061 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col18a1P39061 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC17.79■□□□□ 0.44
Col18a1P39061 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col18a1P39061 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col18a1P39061 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Col18a1P39061 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC17.79■□□□□ 0.44
Col18a1P39061 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC17.79■□□□□ 0.44
Col18a1P39061 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 Gm17812-201ENSMUST00000204935 318 ntBASIC17.79■□□□□ 0.44
Col18a1P39061 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC17.79■□□□□ 0.44
Col18a1P39061 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col18a1P39061 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC17.79■□□□□ 0.44
Col18a1P39061 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col18a1P39061 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC17.78■□□□□ 0.44
Col18a1P39061 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms