Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Col1a1P11087 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Col1a1P11087 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col1a1P11087 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.92■□□□□ 0.14
Col1a1P11087 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC15.92■□□□□ 0.14
Col1a1P11087 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC15.92■□□□□ 0.14
Col1a1P11087 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Gm2606-201ENSMUST00000100754 1002 ntBASIC15.91■□□□□ 0.14
Col1a1P11087 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC15.91■□□□□ 0.14
Col1a1P11087 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC15.91■□□□□ 0.14
Col1a1P11087 AC122305.4-201ENSMUST00000216159 1206 ntBASIC15.91■□□□□ 0.14
Col1a1P11087 Gm7293-201ENSMUST00000216682 1007 ntBASIC15.91■□□□□ 0.14
Col1a1P11087 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Col1a1P11087 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Col1a1P11087 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Col1a1P11087 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Col1a1P11087 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Col1a1P11087 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Gm12363-201ENSMUST00000122250 668 ntBASIC15.91■□□□□ 0.14
Col1a1P11087 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
Col1a1P11087 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Nsd1-205ENSMUST00000224693 852 ntBASIC15.91■□□□□ 0.14
Col1a1P11087 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col1a1P11087 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Col1a1P11087 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Col1a1P11087 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Col1a1P11087 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Col1a1P11087 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC15.9■□□□□ 0.14
Col1a1P11087 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.9■□□□□ 0.14
Col1a1P11087 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC15.9■□□□□ 0.14
Col1a1P11087 Gm4768-201ENSMUST00000206199 686 ntBASIC15.9■□□□□ 0.14
Col1a1P11087 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC15.9■□□□□ 0.14
Col1a1P11087 Gm19163-201ENSMUST00000223313 780 ntBASIC15.9■□□□□ 0.14
Col1a1P11087 CT030182.1-201ENSMUST00000225935 533 ntBASIC15.9■□□□□ 0.14
Col1a1P11087 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col1a1P11087 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
Col1a1P11087 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col1a1P11087 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Col1a1P11087 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC15.89■□□□□ 0.13
Col1a1P11087 Gm6447-201ENSMUST00000118905 835 ntBASIC15.89■□□□□ 0.13
Col1a1P11087 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col1a1P11087 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col1a1P11087 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC15.89■□□□□ 0.13
Col1a1P11087 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col1a1P11087 AC096628.2-201ENSMUST00000225443 1413 ntBASIC15.89■□□□□ 0.13
Col1a1P11087 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC15.89■□□□□ 0.13
Col1a1P11087 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms