Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.46□□□□□ -0.25
Chd3B1AR17 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 AC148324.1-201ENSMUST00000219034 4240 ntBASIC13.46□□□□□ -0.25
Chd3B1AR17 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Chd3B1AR17 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC13.46□□□□□ -0.25
Chd3B1AR17 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Zkscan3-208ENSMUST00000224820 5398 ntBASIC13.46□□□□□ -0.25
Chd3B1AR17 Gm15889-202ENSMUST00000212669 2443 ntBASIC13.46□□□□□ -0.25
Chd3B1AR17 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Chd3B1AR17 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Chd3B1AR17 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
Chd3B1AR17 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Chd3B1AR17 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
Chd3B1AR17 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Chd3B1AR17 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Chd3B1AR17 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.46□□□□□ -0.26
Chd3B1AR17 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Chd3B1AR17 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Gm28911-201ENSMUST00000188837 117 ntBASIC13.45□□□□□ -0.26
Chd3B1AR17 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC13.45□□□□□ -0.26
Chd3B1AR17 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd3B1AR17 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Mir6420-201ENSMUST00000185032 102 ntBASIC13.44□□□□□ -0.26
Chd3B1AR17 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Chd3B1AR17 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd3B1AR17 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Chd3B1AR17 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms