Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Ighv1-51-201ENSMUST00000192903 354 ntBASIC14.15□□□□□ -0.14
Vps28Q9D1C8 AL593843.1-201ENSMUST00000195891 145 ntBASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Gm17795-201ENSMUST00000214505 757 ntBASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.15□□□□□ -0.14
Vps28Q9D1C8 AC149294.4-201ENSMUST00000227870 882 ntBASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vps28Q9D1C8 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vps28Q9D1C8 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Gm29741-201ENSMUST00000192667 421 ntBASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vps28Q9D1C8 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Vps28Q9D1C8 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Vps28Q9D1C8 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Vps28Q9D1C8 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Vps28Q9D1C8 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Vps28Q9D1C8 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms