Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rab11fip3Q8CHD8 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
Rab11fip3Q8CHD8 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rab11fip3Q8CHD8 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rab11fip3Q8CHD8 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Rab11fip3Q8CHD8 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Gm5303-201ENSMUST00000117943 1252 ntBASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Gm17870-201ENSMUST00000219489 1174 ntBASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rab11fip3Q8CHD8 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Gm12390-201ENSMUST00000117897 397 ntBASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Gm5687-201ENSMUST00000118252 640 ntBASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Gm8652-201ENSMUST00000181363 964 ntBASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Gm27847-201ENSMUST00000183711 107 ntBASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Gm27375-201ENSMUST00000183799 107 ntBASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rab11fip3Q8CHD8 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rab11fip3Q8CHD8 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Gm15889-202ENSMUST00000212669 2443 ntBASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Gm13886-201ENSMUST00000117876 1183 ntBASIC17.77■□□□□ 0.44
Rab11fip3Q8CHD8 Gm6152-201ENSMUST00000151704 340 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms