Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Gm27839-201ENSMUST00000184242 106 ntBASIC19.41■□□□□ 0.7
Usp47Q8BY87 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Gm18473-201ENSMUST00000220543 868 ntBASIC19.41■□□□□ 0.7
Usp47Q8BY87 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Usp47Q8BY87 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm37133-201ENSMUST00000192705 1922 ntBASIC19.4■□□□□ 0.7
Usp47Q8BY87 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm13612-201ENSMUST00000119276 390 ntBASIC19.4■□□□□ 0.7
Usp47Q8BY87 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm17150-201ENSMUST00000165577 381 ntBASIC19.4■□□□□ 0.7
Usp47Q8BY87 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm37748-201ENSMUST00000194379 1140 ntBASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm18187-201ENSMUST00000196476 984 ntBASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm42550-201ENSMUST00000201553 960 ntBASIC19.4■□□□□ 0.7
Usp47Q8BY87 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp47Q8BY87 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Usp47Q8BY87 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Usp47Q8BY87 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC19.39■□□□□ 0.7
Usp47Q8BY87 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Usp47Q8BY87 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC19.39■□□□□ 0.69
Usp47Q8BY87 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Gm38197-201ENSMUST00000192320 2122 ntBASIC19.39■□□□□ 0.69
Usp47Q8BY87 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp47Q8BY87 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC19.38■□□□□ 0.69
Usp47Q8BY87 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Ankra2-208ENSMUST00000226100 1476 ntBASIC19.38■□□□□ 0.69
Usp47Q8BY87 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC19.38■□□□□ 0.69
Usp47Q8BY87 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp47Q8BY87 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 AC148324.1-201ENSMUST00000219034 4240 ntBASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC19.37■□□□□ 0.69
Usp47Q8BY87 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 69.8 ms