Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Trim28Q62318 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Gm7553-201ENSMUST00000185805 1426 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 Ap5m1-205ENSMUST00000227431 3757 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Gm9200-201ENSMUST00000118513 1354 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim28Q62318 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC17.82■□□□□ 0.44
Trim28Q62318 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Gm37424-201ENSMUST00000191727 561 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 Gm9299-201ENSMUST00000206392 1140 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 Gm29705-201ENSMUST00000212598 474 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 CT573086.1-201ENSMUST00000227202 1074 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Trim28Q62318 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim28Q62318 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Trim28Q62318 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Gm7899-201ENSMUST00000192935 1897 ntBASIC17.82■□□□□ 0.44
Trim28Q62318 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim28Q62318 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
Trim28Q62318 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trim28Q62318 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Trim28Q62318 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trim28Q62318 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC17.81■□□□□ 0.44
Trim28Q62318 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC17.81■□□□□ 0.44
Trim28Q62318 Gm44064-201ENSMUST00000204964 1087 ntBASIC17.81■□□□□ 0.44
Trim28Q62318 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Gm15544-201ENSMUST00000118776 1531 ntBASIC17.81■□□□□ 0.44
Trim28Q62318 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim28Q62318 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim28Q62318 AC096628.2-201ENSMUST00000225443 1413 ntBASIC17.81■□□□□ 0.44
Trim28Q62318 Gm18630-201ENSMUST00000222109 1397 ntBASIC17.8■□□□□ 0.44
Trim28Q62318 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
Trim28Q62318 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC17.8■□□□□ 0.44
Trim28Q62318 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Gm9899-201ENSMUST00000065519 555 ntBASIC17.8■□□□□ 0.44
Trim28Q62318 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Trim28Q62318 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim28Q62318 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim28Q62318 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim28Q62318 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Abhd6-203ENSMUST00000225234 1958 ntBASIC17.79■□□□□ 0.44
Trim28Q62318 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trim28Q62318 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim28Q62318 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms