Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lima1Q9ERG0 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Gm11543-201ENSMUST00000120758 370 ntBASIC13.69□□□□□ -0.22
Lima1Q9ERG0 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lima1Q9ERG0 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.68□□□□□ -0.22
Lima1Q9ERG0 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lima1Q9ERG0 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Gm25925-201ENSMUST00000158314 306 ntBASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Gm18057-201ENSMUST00000208220 503 ntBASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Gm5628-201ENSMUST00000222318 1049 ntBASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lima1Q9ERG0 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms