Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Gm10676-201ENSMUST00000098778 3221 ntBASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Gm27847-201ENSMUST00000183711 107 ntBASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Gm27375-201ENSMUST00000183799 107 ntBASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Gm14752-201ENSMUST00000120719 2075 ntBASIC18.9■□□□□ 0.62
Cpsf1Q9EPU4 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Cpsf1Q9EPU4 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Cpsf1Q9EPU4 AC159649.2-201ENSMUST00000222984 3223 ntBASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC18.89■□□□□ 0.61
Cpsf1Q9EPU4 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Abhd6-203ENSMUST00000225234 1958 ntBASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Gm8062-201ENSMUST00000139696 444 ntBASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cpsf1Q9EPU4 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 AC154725.1-201ENSMUST00000224826 1961 ntBASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Gm6447-201ENSMUST00000118905 835 ntBASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Gm6007-201ENSMUST00000208170 823 ntBASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 CT573086.1-201ENSMUST00000227202 1074 ntBASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cpsf1Q9EPU4 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms