Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Mir3102-201ENSMUST00000175555 104 ntBASIC14.54□□□□□ -0.08
Clp1Q99LI9 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC14.54□□□□□ -0.08
Clp1Q99LI9 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Tyms-ps-201ENSMUST00000219550 915 ntBASIC14.54□□□□□ -0.08
Clp1Q99LI9 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clp1Q99LI9 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Gm9867-201ENSMUST00000192212 2647 ntBASIC14.53□□□□□ -0.08
Clp1Q99LI9 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC14.53□□□□□ -0.08
Clp1Q99LI9 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Gm37922-201ENSMUST00000195596 455 ntBASIC14.53□□□□□ -0.08
Clp1Q99LI9 Gm43758-201ENSMUST00000199500 367 ntBASIC14.53□□□□□ -0.08
Clp1Q99LI9 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.53□□□□□ -0.08
Clp1Q99LI9 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Clp1Q99LI9 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.53□□□□□ -0.08
Clp1Q99LI9 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Gm24526-201ENSMUST00000082921 158 ntBASIC14.53□□□□□ -0.08
Clp1Q99LI9 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Clp1Q99LI9 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.52□□□□□ -0.08
Clp1Q99LI9 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC14.52□□□□□ -0.08
Clp1Q99LI9 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Clp1Q99LI9 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm42790-201ENSMUST00000201268 969 ntBASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm18056-201ENSMUST00000207670 568 ntBASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm18061-201ENSMUST00000208350 562 ntBASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm18063-201ENSMUST00000208529 568 ntBASIC14.52□□□□□ -0.09
Clp1Q99LI9 Gm18052-201ENSMUST00000208750 559 ntBASIC14.52□□□□□ -0.09
Clp1Q99LI9 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.52□□□□□ -0.09
Clp1Q99LI9 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Clp1Q99LI9 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Gm8706-201ENSMUST00000197372 1491 ntBASIC14.51□□□□□ -0.09
Clp1Q99LI9 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.51□□□□□ -0.09
Clp1Q99LI9 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Clp1Q99LI9 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms