Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Gm14730-201ENSMUST00000122378 1045 ntBASIC16.31■□□□□ 0.2
Trim56Q80VI1 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Mir6392-201ENSMUST00000184924 108 ntBASIC16.31■□□□□ 0.2
Trim56Q80VI1 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Gm7498-201ENSMUST00000203282 1084 ntBASIC16.31■□□□□ 0.2
Trim56Q80VI1 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim56Q80VI1 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Gm27772-201ENSMUST00000184900 187 ntBASIC16.3■□□□□ 0.2
Trim56Q80VI1 Gm7558-201ENSMUST00000193221 1165 ntBASIC16.3■□□□□ 0.2
Trim56Q80VI1 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim56Q80VI1 Gm38391-201ENSMUST00000191720 4069 ntBASIC16.3■□□□□ 0.2
Trim56Q80VI1 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Gm11524-201ENSMUST00000119349 807 ntBASIC16.29■□□□□ 0.2
Trim56Q80VI1 Gm12138-201ENSMUST00000122180 951 ntBASIC16.29■□□□□ 0.2
Trim56Q80VI1 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 AC156560.2-201ENSMUST00000221232 264 ntBASIC16.29■□□□□ 0.2
Trim56Q80VI1 AC154687.2-201ENSMUST00000223853 640 ntBASIC16.29■□□□□ 0.2
Trim56Q80VI1 AC159006.1-201ENSMUST00000226396 258 ntBASIC16.29■□□□□ 0.2
Trim56Q80VI1 AC131997.1-201ENSMUST00000228611 1229 ntBASIC16.29■□□□□ 0.2
Trim56Q80VI1 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms