Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Sh3rf1Q69ZI1 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Gm27920-201ENSMUST00000183953 96 ntBASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 AC102291.3-201ENSMUST00000226566 405 ntBASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Rbfox2-208ENSMUST00000227930 1218 ntBASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Sh3rf1Q69ZI1 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Gm6888-201ENSMUST00000221983 706 ntBASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Gm42934-201ENSMUST00000196920 1345 ntBASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Gm13233-201ENSMUST00000118760 1443 ntBASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Gm13244-201ENSMUST00000118855 1446 ntBASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf1Q69ZI1 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf1Q69ZI1 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms