Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Gm27046-201ENSMUST00000182160 463 ntBASIC15.19■□□□□ 0.02
Col11a1Q61245 Mir7032-201ENSMUST00000185154 79 ntBASIC15.19■□□□□ 0.02
Col11a1Q61245 Gm44967-201ENSMUST00000207047 631 ntBASIC15.19■□□□□ 0.02
Col11a1Q61245 Gm18212-201ENSMUST00000211678 889 ntBASIC15.19■□□□□ 0.02
Col11a1Q61245 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Gm10782-202ENSMUST00000223775 1480 ntBASIC15.19■□□□□ 0.02
Col11a1Q61245 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col11a1Q61245 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Col11a1Q61245 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col11a1Q61245 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Col11a1Q61245 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
Col11a1Q61245 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC15.18■□□□□ 0.02
Col11a1Q61245 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC15.18■□□□□ 0.02
Col11a1Q61245 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.18■□□□□ 0.02
Col11a1Q61245 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Col11a1Q61245 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col11a1Q61245 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col11a1Q61245 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Gm26956-201ENSMUST00000182176 986 ntBASIC15.17■□□□□ 0.02
Col11a1Q61245 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 AC154680.1-201ENSMUST00000224376 859 ntBASIC15.17■□□□□ 0.02
Col11a1Q61245 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC15.17■□□□□ 0.02
Col11a1Q61245 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC15.17■□□□□ 0.02
Col11a1Q61245 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Gm14109-201ENSMUST00000118814 309 ntBASIC15.17■□□□□ 0.02
Col11a1Q61245 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC15.17■□□□□ 0.02
Col11a1Q61245 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Col11a1Q61245 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col11a1Q61245 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Gm11331-201ENSMUST00000119764 288 ntBASIC15.16■□□□□ 0.02
Col11a1Q61245 Gm8885-201ENSMUST00000189382 598 ntBASIC15.16■□□□□ 0.02
Col11a1Q61245 Gm34767-201ENSMUST00000191813 1062 ntBASIC15.16■□□□□ 0.02
Col11a1Q61245 Gm9678-201ENSMUST00000198979 1149 ntBASIC15.16■□□□□ 0.02
Col11a1Q61245 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.16■□□□□ 0.02
Col11a1Q61245 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
Col11a1Q61245 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC15.16■□□□□ 0.02
Col11a1Q61245 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col11a1Q61245 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm11960-202ENSMUST00000181063 2858 ntBASIC15.15■□□□□ 0.02
Col11a1Q61245 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm4760-201ENSMUST00000119663 1030 ntBASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms