Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm8862-201ENSMUST00000198379 1346 ntBASIC13.59□□□□□ -0.23
Col9a1Q05722 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.59□□□□□ -0.23
Col9a1Q05722 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col9a1Q05722 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col9a1Q05722 Olfr1171-ps1-202ENSMUST00000150178 1398 ntTSL 3 BASIC13.58□□□□□ -0.23
Col9a1Q05722 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col9a1Q05722 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col9a1Q05722 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Tnf-201ENSMUST00000025263 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Npm1-204ENSMUST00000109354 1157 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm13408-201ENSMUST00000119822 798 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm13935-201ENSMUST00000121859 798 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm15940-201ENSMUST00000156011 817 ntTSL 3 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm3671-201ENSMUST00000182463 1007 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm37042-201ENSMUST00000193816 581 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm31256-201ENSMUST00000194705 506 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm44552-201ENSMUST00000205458 1247 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC13.58□□□□□ -0.24
Col9a1Q05722 CT025694.1-201ENSMUST00000226188 934 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm2824-203ENSMUST00000226189 1228 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm5799-201ENSMUST00000169023 1314 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm28359-201ENSMUST00000187470 1322 ntBASIC13.58□□□□□ -0.24
Col9a1Q05722 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col9a1Q05722 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Gm12940-202ENSMUST00000137236 1970 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col9a1Q05722 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm9062-201ENSMUST00000117712 727 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm7666-201ENSMUST00000146631 819 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm28766-201ENSMUST00000191086 234 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm18692-201ENSMUST00000193047 511 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm30285-201ENSMUST00000214614 422 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC13.57□□□□□ -0.24
Col9a1Q05722 AC153522.1-201ENSMUST00000220047 1090 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 AC126799.1-201ENSMUST00000221976 246 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 AC160962.2-201ENSMUST00000224761 632 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm39214-201ENSMUST00000210912 1542 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Cnbd1-201ENSMUST00000137780 1331 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Col9a1Q05722 Gm42941-201ENSMUST00000200347 1321 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 4933439N06Rik-201ENSMUST00000203062 1365 ntBASIC13.57□□□□□ -0.24
Col9a1Q05722 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col9a1Q05722 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
Col9a1Q05722 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
Col9a1Q05722 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col9a1Q05722 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms