Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Sdc1P18828 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Sdc1P18828 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Gm2445-201ENSMUST00000182798 989 ntBASIC11.33□□□□□ -0.6
Sdc1P18828 Gm37230-201ENSMUST00000194491 818 ntBASIC11.33□□□□□ -0.6
Sdc1P18828 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC11.33□□□□□ -0.6
Sdc1P18828 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC11.33□□□□□ -0.6
Sdc1P18828 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.33□□□□□ -0.6
Sdc1P18828 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Sdc1P18828 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Sdc1P18828 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Gm5385-201ENSMUST00000118988 1559 ntBASIC11.33□□□□□ -0.6
Sdc1P18828 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Sdc1P18828 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 AC164565.1-201ENSMUST00000217520 1484 ntBASIC11.32□□□□□ -0.6
Sdc1P18828 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Gm5422-201ENSMUST00000050717 2721 ntBASIC11.32□□□□□ -0.6
Sdc1P18828 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Sdc1P18828 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC11.32□□□□□ -0.6
Sdc1P18828 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC11.32□□□□□ -0.6
Sdc1P18828 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Gm8668-201ENSMUST00000120559 1447 ntBASIC11.32□□□□□ -0.6
Sdc1P18828 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Syt7-205ENSMUST00000224135 1557 ntBASIC11.32□□□□□ -0.6
Sdc1P18828 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC11.32□□□□□ -0.6
Sdc1P18828 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Sdc1P18828 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Sdc1P18828 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Sdc1P18828 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Sdc1P18828 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Gm17435-202ENSMUST00000212699 1998 ntBASIC11.31□□□□□ -0.6
Sdc1P18828 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC11.31□□□□□ -0.6
Sdc1P18828 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC11.31□□□□□ -0.6
Sdc1P18828 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC11.31□□□□□ -0.6
Sdc1P18828 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC11.31□□□□□ -0.6
Sdc1P18828 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Sdc1P18828 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC11.31□□□□□ -0.6
Sdc1P18828 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC11.31□□□□□ -0.6
Sdc1P18828 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC11.31□□□□□ -0.6
Sdc1P18828 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Sdc1P18828 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sdc1P18828 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC11.31□□□□□ -0.6
Sdc1P18828 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms