Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Gm42872-201ENSMUST00000200026 1967 ntBASIC16.35■□□□□ 0.21
Col3a1P08121 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC16.35■□□□□ 0.21
Col3a1P08121 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col3a1P08121 Gm5187-201ENSMUST00000117317 991 ntBASIC16.35■□□□□ 0.21
Col3a1P08121 Gm13123-201ENSMUST00000122173 492 ntBASIC16.35■□□□□ 0.21
Col3a1P08121 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC16.35■□□□□ 0.21
Col3a1P08121 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC16.35■□□□□ 0.21
Col3a1P08121 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC16.35■□□□□ 0.21
Col3a1P08121 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col3a1P08121 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Col3a1P08121 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC16.34■□□□□ 0.21
Col3a1P08121 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Col3a1P08121 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Col3a1P08121 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Gm10339-203ENSMUST00000225409 1671 ntBASIC16.34■□□□□ 0.21
Col3a1P08121 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC16.34■□□□□ 0.21
Col3a1P08121 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Col3a1P08121 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC16.34■□□□□ 0.21
Col3a1P08121 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Col3a1P08121 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Col3a1P08121 Gm5370-201ENSMUST00000187187 574 ntBASIC16.34■□□□□ 0.21
Col3a1P08121 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col3a1P08121 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col3a1P08121 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col3a1P08121 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Col3a1P08121 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Gm43179-201ENSMUST00000198797 275 ntBASIC16.33■□□□□ 0.2
Col3a1P08121 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
Col3a1P08121 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC16.33■□□□□ 0.2
Col3a1P08121 AC154171.1-201ENSMUST00000224610 643 ntBASIC16.33■□□□□ 0.2
Col3a1P08121 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Col3a1P08121 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.33■□□□□ 0.2
Col3a1P08121 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC16.33■□□□□ 0.2
Col3a1P08121 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Col3a1P08121 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 AC096628.2-201ENSMUST00000225443 1413 ntBASIC16.33■□□□□ 0.2
Col3a1P08121 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col3a1P08121 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col3a1P08121 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Gm22018-201ENSMUST00000104357 131 ntBASIC16.32■□□□□ 0.2
Col3a1P08121 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms