Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.67□□□□□ -0.06
TnfP06804 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC14.67□□□□□ -0.06
TnfP06804 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TnfP06804 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TnfP06804 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC14.67□□□□□ -0.06
TnfP06804 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC14.67□□□□□ -0.06
TnfP06804 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Gm27892-201ENSMUST00000185017 106 ntBASIC14.67□□□□□ -0.06
TnfP06804 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Gm37748-201ENSMUST00000194379 1140 ntBASIC14.67□□□□□ -0.06
TnfP06804 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Gm5035-201ENSMUST00000215581 927 ntBASIC14.67□□□□□ -0.06
TnfP06804 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC14.67□□□□□ -0.06
TnfP06804 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TnfP06804 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TnfP06804 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Gm8131-201ENSMUST00000213783 1570 ntBASIC14.66□□□□□ -0.06
TnfP06804 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC14.66□□□□□ -0.06
TnfP06804 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
TnfP06804 Gm2495-201ENSMUST00000191160 466 ntBASIC14.66□□□□□ -0.06
TnfP06804 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
TnfP06804 Cdk7-205ENSMUST00000225990 1159 ntBASIC14.66□□□□□ -0.06
TnfP06804 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TnfP06804 Gm5356-201ENSMUST00000093326 615 ntBASIC14.66□□□□□ -0.06
TnfP06804 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.66□□□□□ -0.06
TnfP06804 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.66□□□□□ -0.06
TnfP06804 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.66□□□□□ -0.06
TnfP06804 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TnfP06804 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
TnfP06804 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
TnfP06804 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Gm16342-201ENSMUST00000124025 1025 ntBASIC14.65□□□□□ -0.06
TnfP06804 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.65□□□□□ -0.06
TnfP06804 Gm6244-201ENSMUST00000178732 841 ntBASIC14.65□□□□□ -0.06
TnfP06804 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC14.65□□□□□ -0.06
TnfP06804 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 AC125117.1-201ENSMUST00000228121 468 ntBASIC14.65□□□□□ -0.06
TnfP06804 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.65□□□□□ -0.06
TnfP06804 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Gm5161-201ENSMUST00000075243 853 ntBASIC14.65□□□□□ -0.06
TnfP06804 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
TnfP06804 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.65□□□□□ -0.06
TnfP06804 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
TnfP06804 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms