Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Gm45195-201ENSMUST00000205597 1008 ntBASIC14.23□□□□□ -0.13
Vps28Q9D1C8 AC135669.1-201ENSMUST00000213585 412 ntBASIC14.23□□□□□ -0.13
Vps28Q9D1C8 AC131690.1-201ENSMUST00000218406 374 ntBASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Gm9797-201ENSMUST00000052902 613 ntBASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Vps28Q9D1C8 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Gm21854-201ENSMUST00000179901 471 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Gm10766-202ENSMUST00000194123 606 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Gm5425-201ENSMUST00000214125 459 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Vps28Q9D1C8 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Gm8584-201ENSMUST00000171982 758 ntBASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Gm28760-201ENSMUST00000185995 736 ntBASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Gm9347-201ENSMUST00000211473 1607 ntBASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Vps28Q9D1C8 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.21□□□□□ -0.14
Vps28Q9D1C8 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Vps28Q9D1C8 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Vps28Q9D1C8 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Vps28Q9D1C8 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms