Protein–RNA interactions for Protein: P62960

Ybx1, Nuclease-sensitive element-binding protein 1, mousemouse

Known RBP Predictions only

Length 322 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ybx1P62960 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC14.19□□□□□ -0.14
Ybx1P62960 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14.19□□□□□ -0.14
Ybx1P62960 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
Ybx1P62960 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC14.19□□□□□ -0.14
Ybx1P62960 Gm29127-201ENSMUST00000188304 517 ntBASIC14.19□□□□□ -0.14
Ybx1P62960 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.19□□□□□ -0.14
Ybx1P62960 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.19□□□□□ -0.14
Ybx1P62960 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.19□□□□□ -0.14
Ybx1P62960 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ybx1P62960 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Ybx1P62960 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.19□□□□□ -0.14
Ybx1P62960 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ybx1P62960 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ybx1P62960 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ybx1P62960 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.18□□□□□ -0.14
Ybx1P62960 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
Ybx1P62960 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC14.18□□□□□ -0.14
Ybx1P62960 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Snora78-201ENSMUST00000158630 128 ntBASIC14.18□□□□□ -0.14
Ybx1P62960 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm38319-201ENSMUST00000194537 1266 ntBASIC14.18□□□□□ -0.14
Ybx1P62960 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.18□□□□□ -0.14
Ybx1P62960 Gm6983-201ENSMUST00000214912 628 ntBASIC14.18□□□□□ -0.14
Ybx1P62960 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC14.18□□□□□ -0.14
Ybx1P62960 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC14.18□□□□□ -0.14
Ybx1P62960 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Gm10012-201ENSMUST00000078252 192 ntBASIC14.18□□□□□ -0.14
Ybx1P62960 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.18□□□□□ -0.14
Ybx1P62960 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ybx1P62960 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Ybx1P62960 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.17□□□□□ -0.14
Ybx1P62960 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.17□□□□□ -0.14
Ybx1P62960 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.17□□□□□ -0.14
Ybx1P62960 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC14.17□□□□□ -0.14
Ybx1P62960 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.17□□□□□ -0.14
Ybx1P62960 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ybx1P62960 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms