Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Cd40lgP27548 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Cd40lgP27548 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Cd40lgP27548 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC12.85□□□□□ -0.35
Cd40lgP27548 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cd40lgP27548 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Mir1897-201ENSMUST00000122581 272 ntBASIC12.84□□□□□ -0.35
Cd40lgP27548 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Mir8102-201ENSMUST00000184148 139 ntBASIC12.84□□□□□ -0.35
Cd40lgP27548 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.84□□□□□ -0.35
Cd40lgP27548 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.84□□□□□ -0.35
Cd40lgP27548 AC158982.1-201ENSMUST00000228377 901 ntBASIC12.84□□□□□ -0.35
Cd40lgP27548 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Cd40lgP27548 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cd40lgP27548 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Cd40lgP27548 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Cd40lgP27548 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC12.83□□□□□ -0.35
Cd40lgP27548 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Cd40lgP27548 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.83□□□□□ -0.36
Cd40lgP27548 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Gm27533-201ENSMUST00000183800 152 ntBASIC12.83□□□□□ -0.36
Cd40lgP27548 Gm20949-201ENSMUST00000206478 952 ntBASIC12.83□□□□□ -0.36
Cd40lgP27548 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Cd40lgP27548 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Cd40lgP27548 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cd40lgP27548 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cd40lgP27548 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cd40lgP27548 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cd40lgP27548 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cd40lgP27548 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Cd40lgP27548 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms